Question: How can I get the information p or q-arm in chromosome based on dbSNP or others?
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gravatar for sjunlee89
12 days ago by
sjunlee890
sjunlee890 wrote:

I have the result of logistic analysis based on GWAS.

For example, PSCA gene is located on 8 chromosome.

On the other hand, I would like to know the information about p or q-arm on chromosome.

PSCA is positioned 8q24.3 exactly.

So, I have several SNPs that come from GWAS.

How can I get the information about that?

I didn't see the one from dbSNP.

Is there any other annotation tools based on the web or R-packages... whatever.

Thanks advanced.

snp • 96 views
ADD COMMENTlink written 12 days ago by sjunlee890
2

Please use the search function. The query word is "chromosomal bands". Simply intersect your SNPs with the coordinates. Start with Where Can I Find The Basepair Positions Of Chromosome Bands?

ADD REPLYlink written 12 days ago by ATpoint13k

I'm so sorry, I haven't noticed that post. Thank you so much for your help.

ADD REPLYlink written 12 days ago by sjunlee890

No problem :) Happy to help.

ADD REPLYlink written 12 days ago by ATpoint13k
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