Plink2. psam file missing in 1000G Phase3

Question

[Mr Locuace]

Hello, here there is a merged file with all 1000G Phase3 chromosomes:

https://www.cog-genomics.org/plink/2.0/resources#1kg_phase3

They provide the .pgen.zst, .pvar.zst and unannotated .pvar.zst files, but no -psam.zst file. Is there any way to create a psam file out of the two former files, so I can output a binary file after some filtering?

Thanks !

Answer 1

[chrchang523]

"(Quick start: just download the three boldfaced links, and then decompress the .pgen.zst.)"

Look for the third boldfaced link on the top of the page.