Question: PLINK --r2 square: snp ids are not written
0
gravatar for Hamid
6 months ago by
Hamid10
Hamid10 wrote:

Hey Guys, I'm running plink as bellow plink --r2 square --bfile [file] --out out and what I get is a matrix without any header, then where is the snp ids? How do I know which column correspond to which snp? Thanks

r2 ld plink snp • 230 views
ADD COMMENTlink modified 6 months ago by chrchang5235.5k • written 6 months ago by Hamid10
1
gravatar for chrchang523
6 months ago by
chrchang5235.5k
United States
chrchang5235.5k wrote:

You can use e.g. --write-snplist for that.

ADD COMMENTlink written 6 months ago by chrchang5235.5k
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