PLINK --r2 square: snp ids are not written
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2.2 years ago
Hamid ▴ 10

Hey Guys, I'm running plink as bellow plink --r2 square --bfile [file] --out out and what I get is a matrix without any header, then where is the snp ids? How do I know which column correspond to which snp? Thanks

SNP plink ld r2 • 686 views
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2.2 years ago

You can use e.g. --write-snplist for that.

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