What is the formula that Ballgown uses to calculate fc? Does it use a log?
There are several references:
Question: How fold change is calculated in Ballgown?
Fold changes for different gene expression datasets?
Other details that may be useful:
ballgown has "." as Gene Names
ballgown installation problem
Error while loading the data structrure in the ballgown tool
Ballgown library load
And see the right panel for more posts.
hi, The stattest doc says fc=llog(expression+1), while forums say fc=wt/ko if the groups are wt and ko.
The stattest doc says fc=llog(expression+1), while forums say fc=wt/ko if the groups are wt and ko.