Question: Identification of Long Non coding RNa in De novo
0
gravatar for AyehSadr
5 days ago by
AyehSadr0
Iran
AyehSadr0 wrote:

Dear All

I am working on Identification of long non-coding RNAs in scorpion, in this case the genome reference is not available, I have to do blast for to all transcript candidates and I don't find the closest genome. I would appreciate to guide me about the best the best approach.

Best Regards Ayeh

rna-seq • 61 views
ADD COMMENTlink modified 5 days ago • written 5 days ago by AyehSadr0

Which type of data do you have ? RNA-Seq ?

ADD REPLYlink written 5 days ago by Nicolas Rosewick7.3k

Yes, 150 PE and transcriptome assembly process by means of Trinity

ADD REPLYlink written 5 days ago by AyehSadr0

Could you edit your question with these informations. You could try trinotate : https://github.com/Trinotate/Trinotate.github.io/wiki

ADD REPLYlink written 5 days ago by Nicolas Rosewick7.3k
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