Hello! I have a problem with format files. I need to compare the score from two alignments. One is in ".afa" format, second has ".aln" format (after t-coffee alignment). I have to use a mscore tool, but in command it requires two fasta files. ".afa" is ok, but how can i convert ".aln" to fasta?
Now I do it in http://www.sing-group.org/ALTER/. But here I can only convert one file at a time. I need to convert several hundred files.