Question: WGCNA network Analysis
gravatar for biotechuos4
10 months ago by
biotechuos40 wrote:

Hi Everyone,

I'm using WGCNA package in R. Before going in depth I'm a little confused about the nature of the data.

I want to ask if I am using GEO data what could be the nature of the data or TCGA data?

Can anyone please clarify this?


R tcga network wgcna geo • 561 views
ADD COMMENTlink modified 9 months ago by zx87548.8k • written 10 months ago by biotechuos40

Your question is unclear. Both GEO and TCGA contain next-generation-sequencing (mostly Illumina) and array-based data, such as whole-genome-sequencing, RNA-seq, methylation profiles, ChIP-seq etc. What do you mean by "nature" of the data?

ADD REPLYlink modified 10 months ago • written 10 months ago by ATpoint26k

Hi, what do you exactly mean with "nature of the data"? Do you mean if they are numerical? Please elaborate a bit more, as now for me it is not clear what you are asking.

ADD REPLYlink written 10 months ago by Benn7.9k

Thank you very much for your reply. Actually, I want to know about the trait data, weight and also the raw input for the analysis. I was reading tutorials linked to WGCNA package and came to know about these terms.

ADD REPLYlink written 10 months ago by biotechuos40

You should just follow the tutorials, line by line, and then try to understand on your own. If you still have questions, then come back.

ADD REPLYlink written 9 months ago by Kevin Blighe52k
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