Question: Visualize a Bam file as stack reads, not reduced, using Bioconductor
0
gravatar for gybazeta
8 weeks ago by
gybazeta0
gybazeta0 wrote:

Hello, I am trying to produce a graphic in R (bioconductor) showing all reads stacked, not reduced, to a reference (Bam file). The reads need to be sorted by length in the right position with the reference. These are RNA long reads of one particular region. I can produced the graphic using programs like "tablet" but I need a png or svg graphic. Thanks

next-gen R • 192 views
ADD COMMENTlink modified 6 weeks ago by Biostar ♦♦ 20 • written 8 weeks ago by gybazeta0
1

Completely off topic, but it sounds much like you try to program something that looks much like a screen shot of IGV

ADD REPLYlink modified 8 weeks ago • written 8 weeks ago by Carambakaracho970

Can you show an example?

ADD REPLYlink written 8 weeks ago by ATpoint15k

Maybe igvR?

ADD REPLYlink written 8 weeks ago by zx87547.1k
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