Question: Visualize a Bam file as stack reads, not reduced, using Bioconductor
gravatar for gybazeta
8 months ago by
gybazeta0 wrote:

Hello, I am trying to produce a graphic in R (bioconductor) showing all reads stacked, not reduced, to a reference (Bam file). The reads need to be sorted by length in the right position with the reference. These are RNA long reads of one particular region. I can produced the graphic using programs like "tablet" but I need a png or svg graphic. Thanks

next-gen R • 303 views
ADD COMMENTlink modified 7 months ago by Biostar ♦♦ 20 • written 8 months ago by gybazeta0

Completely off topic, but it sounds much like you try to program something that looks much like a screen shot of IGV

ADD REPLYlink modified 8 months ago • written 8 months ago by Carambakaracho1.8k

Can you show an example?

ADD REPLYlink written 8 months ago by ATpoint24k

Maybe igvR?

ADD REPLYlink written 8 months ago by zx87548.2k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 798 users visited in the last hour