Hi! I want to do some cell-type-specific analysis using ChIP-seq. I want to find a list of ChIP-seq peaks locations that are specific to cell types.
I know there are lots of good tools can compare differential binding, such as Diffbind, diffrep, csaw. But it seems those tools can only compare 2 groups.
I'm just wondering if there is a tool that can do differential analysis for more than 3 groups? Any advice would be greatly appreciated!!