Hi recently I downloaded data from FANTOM5 Phase 2.0 ( http://biomart.gsc.riken.jp/ ) with the goal of figuring out TSS sites, however I cannot seem to find any documentations on this. For example, I downloaded FANTOM5 Phase 2. I'm a bit confused,
So for example FANTOM site has many human sample CAGE data from different cell lines and tissues however this file seem to suggest that it is combined from phase 1 and phase2, so does this mean that all the data were somehow average and these are the peaks of the averages? Also why do each row seem to base of of different transcripts?
thanks in advance.