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5.2 years ago
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I like to know is there any way to merge the same coordinate in a table.
Table:
chr1 155944562 155945214 fantom_neuron GSM1554667 9.84447
chr1 155944562 155945214 fantom_neuron GSM1554672 7.43630
chr1 155944562 155945214 fantom_neuron GSM1554678 32.77627
chr1 155945743 155946196 fantom_neuron BAMPE 3.87072
chr1 155945743 155946196 fantom_neuron GSM1554666 18.14939
chr1 155945746 155946202 fantom_neuron GSM1554655 1.14939
Expected table:
chr1 155944562 155945214 fantom_neuron GSM1554667,GSM1554672,GSM1554678 9.84447,7.43630,32.77627
chr1 155945743 155946196 fantom_neuron BAMPE,GSM1554666 18.14939 ,3.87072
chr1 155945746 155946202 fantom_neuron GSM1554655 1.14939
Bedtools, most probably.