Question: I have troubles with my input in SAMBADA software
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gravatar for marianfasanella
11 months ago by
marianfasanella0 wrote:

Hi everyone, I´m trying to use sambada software with my SNPs file but I can´t. I have my plink file obtained from Tassel and I want to transform it for using in Sambada. I put /recode-plink 76 44 final SNPs.plk (I have 76 individuals and 44 SNPs) the program says:

76 £ 44 SNPs SNPs.ped SNPs.map Temps de lecture: 0 76 6 ARBs02_CBPB3ANXX_7___NdD01

It seems that the program doesn´t read my input.... The "final" file that I get has 3 columns for each SNPs, that is, I had 44 SNPs and now I have 132 columns. I don't know how to convert to genotypes and not to alleles. I'm doing something wrong that I don't know what it is... Then I run /sambada.exe PARAM.txt Clim.txt final and the program says: Reading data in Clim.txt Row 0 Reading data in final Row 0 Reading of data completed : 0 s.

What should I´m doing wrong? Thanks in advance,

Mariana

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