Strelka2 and single tumour sample
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3.4 years ago
sbilobram ▴ 20

Is there a variant calling tool for a single tumour sample in Strelka? That is there is NO matched Normal for the FFPE exome sample that I wish to find variants on.

Any Suggestions?

variant calling • 1.5k views
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I think you could probably run Strelka2's germline workflow to at least find variants that differ from your reference genome. https://github.com/Illumina/strelka/blob/v2.9.x/docs/userGuide/README.md#germline

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