Question: How to Caculate the input-subtract signal for a specific enhancer region
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2.0 years ago by
biofandd0 wrote:

Hi,all. I'm a tiro for ChIP-Seq, Now, I want to compare ChIP-Seq signal between two conditions, and therefore I plan to caculate the input-subtracted signal for each enhancer region to yield reads per kilobase per million (RPKM). How to get the RPKM info based on the bed file of enhancer peaks and signal bigwig?

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