I need to use Trinotate for finishing my transcriptomic analyses. I have followed the instructions in :
I am in the step called ' Automated Execution of Trinotate: Running computes and loading results' . Apart from running Trinotate itself, I am not sure what I need to do exactly. If I understand correctly the instructions, I need to modify the headers of a file called 'conf.txt' that it is in /auto/conf.txt
BUT I don't find this file anywhere.
I have been googling and found this:
where it explains what is this conf.txt file and what contains.
My questions are:
1 . Do I need to create a file like this: ?
with all the info from https://github.com/Trinotate/Trinotate/blob/master/auto/conf.txt and modify the headers (i.e where to find each file).
2 . Do I need to modify the autoTrinotate.pl?
3 . For running Trinotate the command would be:
Maybe they are very basic questions but I want to be sure that I understand all the steps.
Thank you in advance.