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4.3 years ago
qizhengyang17 ▴ 10
I run JBrowse on my server, and It works fine with FASTA format sequence file and GFF3 format annotation file. But when JBrowse display feature data from VCF files, it gives me this error.
Any help is appreciated. Thanks
Maybe just as the error said, your VCF has a bad header format? Could you use a different VCF to try it?
I will try. I can use the vcf file in IGV. When used in JBrowse, the file should be compressed and indexed.
Can you post your track configuration part for this VCF track?
And my VCF header looks like this:
VCF files usually have header lines starting with ## for metadata, reference, etc. Do you have those in your VCF? Something as these:
yes. I have.
I change my web server from Apache to Nginx, and it works.