Question: How to understand data in custom track of ucsc genome browsers
0
gravatar for kmkdesilva
10 months ago by
kmkdesilva80
United States
kmkdesilva80 wrote:

Hi everyone,

I am looking at these custom tracks for whole genome sequence of a zebra on ucsc genome browser. It is mapped against horse reference genome. To my understanding the red track is the forward strand of zebra and blue track is the reverse strand of zebra. I want to get the paired end reads for a specific region, which I know the coordinates. I can right click on the track and get the DNA sequence. Can someone please tell me is it correct if I save the sequence from the red track as R1.fasta and the sequence from the blue track as R2 fasta.

ADD COMMENTlink written 10 months ago by kmkdesilva80
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1577 users visited in the last hour