In the above link, the design section has barcode sequences, how do i get all the reads with each particular barcode?
I did try using grep '^<barcode sequence="">' from the fastq file. But as you can see the last column in the link is "no. of sequences" and when i try to count the number by using grep, I'm getting a different number. The number I get is not matching with what they have provided.
Am i using grep incorrectly? what is the position of these barcode sequences?