Question: Error when running sma3s for proteome annotation
gravatar for l.souza
4 months ago by
Brasilia, Brazil
l.souza70 wrote:

Hello everyone,

I have been trying to run sma3s for protein annotation, according to the author's instructions (UPOBioinfo Group). However, when running the command

./ -i query_dataset.fasta -d uniref90.fasta -goslim

I got the message "Problem with blastdbcmd. It could be due to an empty or erroneous Blast report file, indexed fasta, or low RAM memory". When I check the files in the folder, the uniref90.fasta file has been emptied.

Does anyone know how to solve it?

Thanks in regard,


sma3s go proteome annotation • 134 views
ADD COMMENTlink modified 4 months ago • written 4 months ago by l.souza70
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