Hi, everyone, I am using R clusterProfiler package to do GSEA analysis. Following is my code,
GSEA_GO_BP <- GSEA(cor_sort, exponent = 1, nPerm = 1000, minGSSize = 10, maxGSSize = 500, pvalueCutoff = 1, pAdjustMethod = "BH", seed=FALSE, TERM2GENE=GO_BP)
I got one question. No matter whether I set seed TRUE or FALSE, GSEA results always changed. I just can't get a reproducible result. Did i set seed in a wrong way? I also see someone else posted the same question, but still no answer.
Thanks in advance.