Question: Ensembl ID found on the site but not in downloaded flat file
0
gravatar for Chat-ra
11 months ago by
Chat-ra20
Chat-ra20 wrote:

Hello everyone!

I’ve downloaded several Ensembl file (the entrez and uniprot ones) found here: http://ftp.ensembl.org/pub/release-95/tsv/homo_sapiens/ While working I’ve encountered an issue. Some of the Ensembl gene ID are available on the web site but I can’t find them in the downloaded files.

For example:

ENSG00000169668 ( https://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000169668;r=22:21103016-21122285 )

ENSG00000237276 ( http://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000237276;r=1:16215909-16228027 )

Is there someone who can help me figure out what is happening? Thank you for any suggestions!!!

entrez uniprot ensembl genome • 316 views
ADD COMMENTlink modified 11 months ago by Devon Ryan94k • written 11 months ago by Chat-ra20
3
gravatar for Emily_Ensembl
11 months ago by
Emily_Ensembl20k
EMBL-EBI
Emily_Ensembl20k wrote:

These IDs are not in the files because the files map between Ensembl identifiers and other databases. These IDs have no match in these databases.

ADD COMMENTlink written 11 months ago by Emily_Ensembl20k

Okey !! Thank you !!

ADD REPLYlink written 11 months ago by Chat-ra20
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