Question: Trio data base for de-novo mutations
gravatar for hamid.khape
22 months ago by
hamid.khape0 wrote:

I am new in bioinformatics. I am looking for a database containing healthy trios VCF files so that I can find de-novo mutations of a child in a family. I have tried 1000 genome project, but most of the children are missing in the phase 3 VCF files.

snp alignment genome • 548 views
ADD COMMENTlink written 22 months ago by hamid.khape0

Hi , Do you have acces to raw sequencing (bam/ fastq files) ? So in this case you could generate the vcf missing. Can you explain a bit more what is the your final goal ? Best

ADD REPLYlink modified 22 months ago • written 22 months ago by Titus910

Yes, I have access, but I do not want to generate those files by my self. In addition, some BAM or FASTQ files of the samples are missing in the data part, so it is better to find a new data base. There is no final goal. It is a class assignment.

ADD REPLYlink written 22 months ago by hamid.khape0
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