Question: Trio data base for de-novo mutations
gravatar for hamid.khape
6 weeks ago by
hamid.khape0 wrote:

I am new in bioinformatics. I am looking for a database containing healthy trios VCF files so that I can find de-novo mutations of a child in a family. I have tried 1000 genome project, but most of the children are missing in the phase 3 VCF files.

snp alignment genome • 103 views
ADD COMMENTlink written 6 weeks ago by hamid.khape0

Hi , Do you have acces to raw sequencing (bam/ fastq files) ? So in this case you could generate the vcf missing. Can you explain a bit more what is the your final goal ? Best

ADD REPLYlink modified 6 weeks ago • written 6 weeks ago by Titus810

Yes, I have access, but I do not want to generate those files by my self. In addition, some BAM or FASTQ files of the samples are missing in the data part, so it is better to find a new data base. There is no final goal. It is a class assignment.

ADD REPLYlink written 6 weeks ago by hamid.khape0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1097 users visited in the last hour