Question: Error of Netics : Multi omics intergration tool
0
gravatar for archie
15 days ago by
archie70
India
archie70 wrote:

Hello everyone,

I am running Netics code to prioritize genes in my project. Basically, I am working on PDAC cancer . I have transcriptome and mutation data. I am trying to run 'NETICS' code available at https://github.com/cbg-ethz/netics.

As a very first step, I am trying to run test data given along with netics folder. But during run time, it is giving me error:

Error using fdr
Too many output arguments.

Error in netics_fun>read_diff_expr (line 173)
        [~,~,pval_all] = fdr(pval_all,0.05);

Error in netics_fun (line 91)
        diff_expr_genes = read_diff_expr( filenameRNA, filenamePR );

ICan anyone help me here to fix this issue ??

Thank you

ADD COMMENTlink modified 11 days ago by WouterDeCoster37k • written 15 days ago by archie70
0
gravatar for archie
11 days ago by
archie70
India
archie70 wrote:

It worked for me. I downloaded fdr function from https://brainder.org/2011/09/05/fdr-corrected-fdr-adjusted-p-values/ I missed this information earlier. Test run is working now.

Thanks

ADD COMMENTlink written 11 days ago by archie70
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 889 users visited in the last hour