I want to use Weighted co-relation network analysis (WGCNA) for bisulfite data (DNA methylation study) . I got seven treatment with three replicates each. (7*3= 21 samples). I have done WGCNA for RNASeq data and I understand we need normalised matrix count as an input file. What would be the input file for bisulfite data? Has anyone done similar study, could you please help me?
Many Thanks Archana