I am gearing up for a genome annotation run using MAKER. It is suggested to use a repeat library when running MAKER and as such I am trying to set up RepeatModeler to do so. RepeatModeler relies on program (among several others) called nseg for which I cannot find any documentation. When I try to compile this program with
make on OSX I get a slew of warnings and errors. I have no experience in C and can't find any more information so I'm at a loss.
Can anyone recommend alternative software for repeat identification? Please pull me out of this dependency hell!