Question: methylSeekR error about missing value
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gravatar for 897776177
9 months ago by
8977761770
8977761770 wrote:

I have meet an error with the software MethylSeekR. When i try to use the readMethylome function to read the data, it posts such error:

Error in validObject(.Object) : invalid class “GRanges” object: 'seqnames(x)' contains missing values

However when i try to use the sumis.na(filename)), the result is 0, that is sumis.na(filename)) = 0 .

I am not sure the reason why it gives me such message. Would you please give me some suggestion??

best wishes
xia

software error • 270 views
ADD COMMENTlink modified 7 months ago by RamRS25k • written 9 months ago by 8977761770

Can you show the result of head(filename) -- my guess at this point is that filename is just a character string (pointing to the file) and not the actual file content.

ADD REPLYlink written 7 months ago by Friederike5.2k
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