I have a novel bacterial genome of 8Mb length (Genome1), which I want to compare it with existing well annotated gram-negative bacterial genome (Genome2). Could anyone suggest me a way to check how many genes in my novel species are matching with well-annotated bacterial genome?
One option is to blast Genome 1 with Genome 2. However, How do I visualize? I tried using
but it shows graphs, with the existing genome in the database, we cannot upload any new sequences to do the comparison. :( Any Suggestions? Any web-based tool is available?