Question: Error in phyloseq command
0
gravatar for Bioinfonext
16 days ago by
Bioinfonext140
Korea
Bioinfonext140 wrote:

Hi, I am using R codes for phyloseq analysis with qiime2 2011.18 data. it is showing some error.

I am using codes from this link:

https://github.com/pjtorres/Bioinformatics-BC/blob/master/Phyloseq/QIIME2_Phyloseq/Exporting%20QIIME2%20data%20for%20Phyloseq%20Analysis%202018.ipynb

Error:

biom_data <- import_biom(BIOMfilename = "/Users/3052771/Desktop/Phyloseq-qiime2/Phyloseq/table-with-taxonomy.biom", treefilename = "/Users/3052771/Desktop/Phyloseq-qiime2/Phyloseq/tree.nwk")


Warning message:
In strsplit(msg, "\n") : input string 1 is invalid in this locale

It will be a great help if you can suggest how I can resolve it.

next-gen software error • 107 views
ADD COMMENTlink modified 16 days ago by ATpoint14k • written 16 days ago by Bioinfonext140

it is resolve, thanks

ADD REPLYlink written 13 days ago by Bioinfonext140
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