Question: Error in phyloseq command
0
gravatar for Bioinfonext
23 months ago by
Bioinfonext320
Korea
Bioinfonext320 wrote:

Hi, I am using R codes for phyloseq analysis with qiime2 2011.18 data. it is showing some error.

I am using codes from this link:

https://github.com/pjtorres/Bioinformatics-BC/blob/master/Phyloseq/QIIME2_Phyloseq/Exporting%20QIIME2%20data%20for%20Phyloseq%20Analysis%202018.ipynb

Error:

biom_data <- import_biom(BIOMfilename = "/Users/3052771/Desktop/Phyloseq-qiime2/Phyloseq/table-with-taxonomy.biom", treefilename = "/Users/3052771/Desktop/Phyloseq-qiime2/Phyloseq/tree.nwk")


Warning message:
In strsplit(msg, "\n") : input string 1 is invalid in this locale

It will be a great help if you can suggest how I can resolve it.

next-gen software error • 527 views
ADD COMMENTlink modified 23 months ago by ATpoint44k • written 23 months ago by Bioinfonext320

it is resolve, thanks

ADD REPLYlink written 22 months ago by Bioinfonext320
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1686 users visited in the last hour
_