Question: UK Biobank reference genome?
0
gravatar for Sal.Leggio63
21 months ago by
Sal.Leggio630 wrote:

How do I find out the reference genome for the UK Biobank? If you could direct me to an article that I could cite, that would be terrific.

reference genome uk biobank • 1.7k views
ADD COMMENTlink modified 16 months ago by Eric T.2.6k • written 21 months ago by Sal.Leggio630
1
gravatar for Kevin Blighe
21 months ago by
Kevin Blighe68k
Republic of Ireland
Kevin Blighe68k wrote:

I searched the official docs and found GRCh37 (hg19). Take a look:

ADD COMMENTlink written 21 months ago by Kevin Blighe68k
1
gravatar for Eric T.
16 months ago by
Eric T.2.6k
San Francisco, CA
Eric T.2.6k wrote:

The exomes are aligned to GRCh38 with the "chr" prefix removed from the sequence names.

The older SNP array genotypes, as Kevin noted, use GRCh37 as the reference.

ADD COMMENTlink written 16 months ago by Eric T.2.6k
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