l have four samples from four experiments. 5021 genes that are folding change more than 2 and 2317 long coding RNA. How can I make a co-expression with this data?
thanks a lot
Cross-posted on Bioconductor: https://support.bioconductor.org/p/118906/
There's no way to make a meaningful WGCNA with 4 samples (it's not clear what you mean by 4 experiments...).
Now, how can I get the modules according to correlation?
Dude, just don't do it. You cannot create any meaningful results from just 4 samples.