Question: co-expresson network between LncRNA-mRNA
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gravatar for yaghoub.amraei
10 weeks ago by
yaghoub.amraei10 wrote:

Hi.all l have four samples from four experiments. 5021 genes that are folding change more than 2 and 2317 long coding RNA. How can I make a co-expression with this data? thanks a lot

R • 253 views
ADD COMMENTlink modified 10 weeks ago by peter.langfelder20 • written 10 weeks ago by yaghoub.amraei10

Cross-posted on Bioconductor: https://support.bioconductor.org/p/118906/

ADD REPLYlink written 10 weeks ago by Kevin Blighe42k
2
gravatar for peter.langfelder
10 weeks ago by
peter.langfelder20 wrote:

There's no way to make a meaningful WGCNA with 4 samples (it's not clear what you mean by 4 experiments...).

ADD COMMENTlink modified 10 weeks ago • written 10 weeks ago by peter.langfelder20

Now, how can I get the modules according to correlation?

ADD REPLYlink written 10 weeks ago by yaghoub.amraei10
1

Dude, just don't do it. You cannot create any meaningful results from just 4 samples.

ADD REPLYlink written 10 weeks ago by Kevin Blighe42k
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