Hi, I am new to Bioinformatics! :)
What I am looking for is a tool or software that once the Phylogenetic Tree is created( whichever method used) that I can select one sequence on the tree and compare it to other sequences of my choosing, and it will show all the similar mutations of X length and highlight it in the genome or highlight the data where I can visually see all the areas of these similar blocks of mutations. Perhaps a graph of findings.Also, sequences that have these mutations similiar in a specific partition but are different in the rest.
For example, how many nucleotides of length 3-5 are in the same in the sequence X, Y, Z species that I choose but are not in Species A,B.
A friend mentioned a Tolerance Tool was being used in one software was it was very tedious
I hope I am making sense. Any guidance would be greatly appreciated. Thank you