Question: How do get additional bam statistics
gravatar for t-jim
18 months ago by
t-jim30 wrote:

I have multiple bam files and I'm looking for some statistics about them.

I know how to generate basic statistics using samtools flagstat but i want additional statistics like how many reads are mapped to transcripts, to introns, to intergenic regions, etc.

Can someone tell me a way do do that?

bam rna-seq samtools alignment • 429 views
ADD COMMENTlink written 18 months ago by t-jim30
ADD REPLYlink modified 18 months ago • written 18 months ago by genomax89k
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