Question: blastn output format with full subject's sequence
0
gravatar for genya35
4 months ago by
genya3520
genya3520 wrote:

Hello,

Is there an outfmt option for blastn that will return the full subject's sequence in tubular format? I have tried outfmt 6 but it i don't see an option of returning the full subject's sequence.

Thanks

sequence • 205 views
ADD COMMENTlink modified 4 months ago by h.mon26k • written 4 months ago by genya3520
2
gravatar for h.mon
4 months ago by
h.mon26k
Brazil
h.mon26k wrote:

I don't think there is an option in blastn to return the full sequence. You can parse the tabular output of blastn and retrieve the sequences directly from the blast database with blastdbcmd: Extracting data from BLAST databases with blastdbcmd.

ADD COMMENTlink written 4 months ago by h.mon26k
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