Hi all, I am new in R and bioinformatics and i wanted to know what are the steps to prepare data for the R package - GOplot. I ve read the tutorial here : http://wencke.github.io/ , installed all packages needed. But i dont know how to prepare my data so i can import them into the R package and also from DAVID annotation online tool i dont know which annotation i should download. I got a .csv file with gene-ids (showing just 1 for example) from an rna-seq analysis (differential expression) looking like this :
> id baseMean baseMeanA baseMeanB foldChange log2FoldChange pval padj > CCL5 1922.0292307213 4.3818338728 3839.6766275698 876.2716111556 9.77523431 2.3E-58 1.34E-54
Any help would be appreciated.