I am interested in retrieving operons from prokaryotic genomes available in NCBI with the objective of looking at their synteny. My questions is how to assemble an operon when it is scattered among different scaffolds. As an example, if i want to look at Cylindrospermopsis raciborskii devBCA operon or nif operon with other spp. Cylindrospermopsis raciborskii representative genome (genome_assembly_id=172353 , shotgun sequencing) consist of 93 scaffolds and genes of the operon are find in many scaffolds. What is the in silico procedure, I should follow in order to overcome this issue?