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• Where Do We Use Haplotype Reconstarction Result?
  Dear all I have studied Linkage Disequilibrium on genotyped data (SNP chip) from 6 month ago. I ...
• Can you please help me in my haplotype analysis?
  Hello everybody Can you please help me in my haplotype analysis? I want to find out the relation...
• How To Reconstruct Haplotypes And Visualize Them In Haploview
  Dear all I genotyped data from 1500 animals by 50K chips, and now I want to use haploview for bl...
• Haplotype Sharing Analysis From High Density Snp Data
  Hi, I would like to do the haplotype sharing analysis something similar to this paper http://m...
• Haplotype Sharing Analysis With Illumina/Affymatrix Snp Data
  Hi, I need to make a haplotype sharing analysis in population Genetics. I have with me an illumi...
• Haplotypes from SNP data
  Hello, I want to generate haplotypes from SNP data such that for example I could use 4 SNPs to c...
• How to get Haplotype file from PLINK format data
  My origional data is in PLINK format (.bim, .bed , .fam). can I get haplotype file from this plin...
• Haplotype List In Arlequin
  I am using phased DNA sequence data to generate a haplotype list and then find their distribution...
• Run of homozigosity on multiple imputed chips
  Dear all, we are doing a study on the possible association between ROH and disease. We have SNP-c...
• How to do a Haplotype based GWAS?
  Hello, this is my first post in this renowned group. Acutally, I am struggling with Haplotype bas...
• how to haplotyping from vcf file?how to analysis ld block?
  hi i am bioinformatics beginner i have a vcf file(this file include snp and positions by samples)...
• Haplotype Association Tests
  Dear all, I am runing assocation analysis with PLINK. I need to test the effect of combination o...
• How To Prepare The Input For The Germline Software For The Inference Of Ibd Patterns
  Hello I wanted to use the program GERMLINE for the inference of IBD patterns and then DASH for t...
• CNV calling and analysis from Affymetrix Axiom 50K SNP chip
  I just got 50K SNPchip data from Affymetrix . I want to perform CNV analysis with it but can't fi...
• how can I make input file for Haploview from Output files of inferred haplotypes by fastPHASE?
  Dear all I am doing LD analysis and selection signature on 50k snp data of cattle. For the analy...
• Comparing Illumina with Affymetrix data
  I have data from a 50k Illumina bovine chip and data from a 600k Affymetrix bovine chip and I wou...
• How to calculate SNP LD values from haplotype data
  I have a haplotype matrix determined from a genotype data of bi-allelic SNP. The genotype to ha...
• Meta-Analysis chip-seq data
  Hello all. Can I do Meta-Analysis by CHIP-seq data with different antibodies?????? Thanks a lot
• Haplotype sharing of mutation carriers
  Hi everyone, I have a question regarding the construction of haplotypes. We have WES data of (u...
• Haplotype Sorting by similarity
  Hi, I have the phased haplotype data set read into R, where each column represents a SNP and eac...
• Affy Data Into Illumina Genome Studio
  Hi, Does anyone know if and how I can get affymetrix chip data into Illumina genome studio for vi...