Haplotypes analysis from SNP chip data
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3.6 years ago
rthapa ▴ 60

Hi,

I want to do Haplotypes analysis and comparison of different genotypes from SNP chip data. Do you have any suggestion on the tools that I can use for?

Thanks

SNP • 694 views
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Entering edit mode
3.5 years ago

Sure, I will suggest PLINK and HaploView. PLINK is a general 'all rounder' for SNP analyses (that is, a program with much functionality); HaploView will identify haplotypes and haploblocks in your data.

Kevin

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