Question: Haplotypes analysis from SNP chip data
0
gravatar for rthapa
12 days ago by
rthapa0
rthapa0 wrote:

Hi,

I want to do Haplotypes analysis and comparison of different genotypes from SNP chip data. Do you have any suggestion on the tools that I can use for?

Thanks

snp • 91 views
ADD COMMENTlink modified 9 days ago by Kevin Blighe39k • written 12 days ago by rthapa0
0
gravatar for Kevin Blighe
9 days ago by
Kevin Blighe39k
Republic of Ireland
Kevin Blighe39k wrote:

Sure, I will suggest PLINK and HaploView. PLINK is a general 'all rounder' for SNP analyses (that is, a program with much functionality); HaploView will identify haplotypes and haploblocks in your data.

Kevin

ADD COMMENTlink modified 9 days ago • written 9 days ago by Kevin Blighe39k
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