Question: scRNA-seq python tutorial
0
gravatar for brc
8 days ago by
brc0
Germany
brc0 wrote:

I'm looking for a python tutorial on scRNA-seq/RNS-seq data analysis. It will be helpful if someone could point towards the relevant resources.

ADD COMMENTlink modified 8 days ago by Friederike3.3k • written 8 days ago by brc0
2

Here is a nice compilation of all things scRNA by @Sean Davis: https://github.com/seandavi/awesome-single-cell While mostly R there are some Python things in there.

ADD REPLYlink modified 8 days ago • written 8 days ago by genomax64k
1

I guess you mean RNA-seq. I have to disappoint you. RNA-seq is most commonly analyzed in R using packages such as edgeR, DESeq2 or limma. Start with this tutorial on RNA-seq analysis with DESeq2. For scRNA-seq, search for Seurat tutorials. Can be found via google. Also in R.

ADD REPLYlink modified 8 days ago • written 8 days ago by ATpoint14k
2
gravatar for Friederike
8 days ago by
Friederike3.3k
United States
Friederike3.3k wrote:

The scanpy tutorials might be a good start.

ADD COMMENTlink written 8 days ago by Friederike3.3k
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