Question: scRNA-seq python tutorial
gravatar for brc
5 months ago by
brc10 wrote:

I'm looking for a python tutorial on scRNA-seq/RNS-seq data analysis. It will be helpful if someone could point towards the relevant resources.

ADD COMMENTlink modified 26 days ago by Mitch0 • written 5 months ago by brc10

Here is a nice compilation of all things scRNA by @Sean Davis: While mostly R there are some Python things in there.

ADD REPLYlink modified 5 months ago • written 5 months ago by genomax70k
gravatar for Friederike
5 months ago by
United States
Friederike4.9k wrote:

The scanpy tutorials might be a good start.

ADD COMMENTlink written 5 months ago by Friederike4.9k
gravatar for Mitch
26 days ago by
Mitch0 wrote:

Fabian Theis' lab has recently published Lücken & Theis, Current best practices in single‐cell RNA‐seq analysis: a tutorial together with a nice github repository in which you can find an example case study Jupyter notebook written in Python. I can highly recommend this.

In case you would like to use it on your own data, you could head over to FASTGenomics. It is an online platform for single cell analytics and it offers a generalized version of the case study notebook, which might be applicable to your own dataset.

ADD COMMENTlink written 26 days ago by Mitch0
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