Question: R package for cross-platform meta analysis
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gravatar for BioLite
8 months ago by
BioLite20
BioLite20 wrote:

I want to run a meta-analysis with some GEO datasets from several different platforms, including
GPL257(NCI_UniGEM2_HCC), GPL25507(NanoString cancer immune panel v1.1 + 6 custom genes), GPL8432(Illumina HumanRef-8 WG-DASL v3.0), and some Affymetrix microarrays with different sub-platform.

I want to merge these datasets with the help of R package "crossmeta", may this work well?

ADD COMMENTlink modified 8 months ago by Kevin Blighe51k • written 8 months ago by BioLite20
0
gravatar for Kevin Blighe
8 months ago by
Kevin Blighe51k
Kevin Blighe51k wrote:

I want to merge these datasets with the help of R package "crossmeta", may this work well?

'Merge' is the wrong term. You want to use crossmeta for performing a meta-analysis, specifically.

RankProd is another that you could use.

Kevin

ADD COMMENTlink written 8 months ago by Kevin Blighe51k
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