Question: Extract all sub-fragments from a gtf
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gravatar for shounak.chakraborty1990
8 months ago by

Hi Everyone,

I am trying to find out all transcripts that are a subfragment of any other transcript from a gtf file. By subfragment, I mean completely contained in another transcript. I used gffCompare but it does not work, since I compare a particular gtf to itself and gffcompare reports all transcripts as a perfect match. I was wondering if there are some programs that actually report subfragments within a gtf file.

Thanks

rna-seq assembly • 144 views
ADD COMMENTlink written 8 months ago by shounak.chakraborty19900
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