Extract all sub-fragments from a gtf
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3.9 years ago

Hi Everyone,

I am trying to find out all transcripts that are a subfragment of any other transcript from a gtf file. By subfragment, I mean completely contained in another transcript. I used gffCompare but it does not work, since I compare a particular gtf to itself and gffcompare reports all transcripts as a perfect match. I was wondering if there are some programs that actually report subfragments within a gtf file.

Thanks

RNA-Seq Assembly • 472 views
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