Question: Is there a way to run RAST annotation locally?
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gravatar for gabriel.jabud
20 months ago by
United States
gabriel.jabud40 wrote:

Is there any way to run RAST locally? We have found issues with using Prokka to annotate bacterial genomes and would like to give RAST a try. However, since these genomes are proprietary I can't upload them to the RAST server. Is it possible to download RAST and run it from a command line without it accessing the server?

ADD COMMENTlink written 20 months ago by gabriel.jabud40

RAST I don't know, but you can install and run the NCBI Prokaryotic Genome Annotation Pipeline.

ADD REPLYlink written 20 months ago by h.mon31k

In theory it is possible to do this. Website that lists the software is here. Actual software downloads are available here. Fair warning: YMMV.

ADD REPLYlink modified 20 months ago • written 20 months ago by genomax92k
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