Question: Is there a way to run RAST annotation locally?
gravatar for gabriel.jabud
8 months ago by
United States
gabriel.jabud20 wrote:

Is there any way to run RAST locally? We have found issues with using Prokka to annotate bacterial genomes and would like to give RAST a try. However, since these genomes are proprietary I can't upload them to the RAST server. Is it possible to download RAST and run it from a command line without it accessing the server?

ADD COMMENTlink written 8 months ago by gabriel.jabud20

RAST I don't know, but you can install and run the NCBI Prokaryotic Genome Annotation Pipeline.

ADD REPLYlink written 8 months ago by h.mon28k

In theory it is possible to do this. Website that lists the software is here. Actual software downloads are available here. Fair warning: YMMV.

ADD REPLYlink modified 8 months ago • written 8 months ago by genomax74k
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