Question: Is there a way to run RAST annotation locally?
0
gravatar for gabriel.jabud
7 days ago by
United States
gabriel.jabud0 wrote:

Is there any way to run RAST locally? We have found issues with using Prokka to annotate bacterial genomes and would like to give RAST a try. However, since these genomes are proprietary I can't upload them to the RAST server. Is it possible to download RAST and run it from a command line without it accessing the server?

ADD COMMENTlink written 7 days ago by gabriel.jabud0

RAST I don't know, but you can install and run the NCBI Prokaryotic Genome Annotation Pipeline.

ADD REPLYlink written 7 days ago by h.mon24k

In theory it is possible to do this. Website that lists the software is here. Actual software downloads are available here. Fair warning: YMMV.

ADD REPLYlink modified 7 days ago • written 7 days ago by genomax64k
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