Question: Is there a way to run RAST annotation locally?
0
gravatar for gabriel.jabud
8 months ago by
United States
gabriel.jabud20 wrote:

Is there any way to run RAST locally? We have found issues with using Prokka to annotate bacterial genomes and would like to give RAST a try. However, since these genomes are proprietary I can't upload them to the RAST server. Is it possible to download RAST and run it from a command line without it accessing the server?

ADD COMMENTlink written 8 months ago by gabriel.jabud20

RAST I don't know, but you can install and run the NCBI Prokaryotic Genome Annotation Pipeline.

ADD REPLYlink written 8 months ago by h.mon28k

In theory it is possible to do this. Website that lists the software is here. Actual software downloads are available here. Fair warning: YMMV.

ADD REPLYlink modified 8 months ago • written 8 months ago by genomax74k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2062 users visited in the last hour