Question: Variant Effect Prediction Databases
0
gravatar for cocchi.e89
22 months ago by
cocchi.e89120
cocchi.e89120 wrote:

Dear all,

I have to find the predicted effect of a large sample of variants, I know about GnomAD VEP annotation but some of them are absent in GnomAD. How could I try to retrieve those variants effect? Other Databases etc?

PS: I have to integrate it into a pipeline so I need some source database, can not operate just with some webpage consultation

Thanks a lot in advance for any help!

ADD COMMENTlink written 22 months ago by cocchi.e89120

SNV, SV? Coding, non-coding?

ADD REPLYlink written 22 months ago by ATpoint44k

basically SNV/INDEL in exome studies, but I would appreciate so much even broader comments

ADD REPLYlink written 22 months ago by cocchi.e89120
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