Given a set of short reads from an RNA-Seq experiment and the reference sequence of a gene, my goal is to write an aligner to find out how much gene is expressed and locate the locations of its exons. Semi global alignment must be used, no end gap penalties. Could you advice me which tools could bu used or there is an aligner to use? If not I'll have to write the code by myself.
Question: Aligning RNA-Seq short reads to a reference gene with semi global alignment
4 weeks ago by
sr • 0
sr • 0 wrote:
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