Entering edit mode
5.0 years ago
hamid.khape
•
0
Hi everyone,
I am using samtools to make a mpileup file for three samples, and I am using the 1000 genome project data set. Firstly, I want to know how I can make sure that the resulting mpileup file is correct. Secondly, in case of the incorrect result, what could be the reasons for this incorrect mpileup file if?
I am using the ubuntu bash on win 10, and my samtool command is:
$ samtools mpileup -B -q 1 -f build37.fa HG00403.bam HG00404.bam HG00405.bam >trio.mpileup