**120**wrote:

Hi Everyone,

In the following examples we see the second example has better result and more separable.

Is it possible to see somehow **find this separation based on the data matrix of PCA result**? e.g. based on some kind of score like Mean, Median calculation of the components or any other way?

**PCA_example 1:**

**PCA_example 2:**

**The code used:**

```
pca <- prcomp(dataMatrix, scale=T)
scores <- data.frame(Groups, pca$x[,1:3])
pc1.2 <- qplot(x=PC1, y=PC2, data=scores, colour=factor(Groups)) + theme(legend.position="right")
```

Thanks in advance