I need to plot Lolliplots, trackviewer for a selected gene.
I am a principiant Rstudio user. I want to create a lolliplot that shows pathogenic and probably pathogenic variants in APC gene, which are described in ensembl database. I want to export this file in BED format, but I can not download only these types of mutations (I can download all mutations, including benign variants, but I can not filter it).
Can someone help me to download and load these files in Rstudio?
Thank you so much,