index older than input file
1
0
Entering edit mode
3.4 years ago
Learner ▴ 250

I am combining several samples that are different from each other. I can combine them but I get warning which makes me worries. I had a missing index in the header which I add it. however, after merging, I get the following warning and I am wondering if I can ignore it

Done 
   WARN  11:16:25,133 RMDTrackBuilder - Index file /Users/analyzed/sam1.vcf.idx is out of date (index older than input file), deleting and updating the index file 
    WARN  11:16:38,802 RMDTrackBuilder - Index file /Users/analyzed/sam2.vcf.idx is out of date (index older than input file), deleting and updating the index file 
    WARN  11:16:52,653 RMDTrackBuilder - Index file /Users/analyzed/sam3.vcf.idx is out of date (index older than input file), deleting and updating the index file

should I ignore these warnings?

genome • 5.1k views
ADD COMMENT
3
Entering edit mode
3.4 years ago

that shouldn't be a problem, you'll get some fresh index.

May be the difference of date of modification of sam1.vcf and sam1.vcf.idx is just too short or negative.

after generating the sam1.vcf.idx you could run

touch -c sam1.vcf.idx
ADD COMMENT

Login before adding your answer.

Traffic: 1327 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6