Question: XADL field in VCF from Variation Graphs
0
gravatar for ziaursani
15 months ago by
ziaursani0
ziaursani0 wrote:

Here are some examples of variant calls from vcf of variation graphs

chrXII:450575..469931 14646 2174_2175_2177_2178-2174_2175_2178 A ATA 7301 lowxadl DP=595;SVLEN=2;XSEE=15 GT:DP:XDP:AD:XADL:SB:XAAD 1/0:595:1008,565:193,402:-40.210627:5,188,7,395:402 chrXII:450575..469931 14685 2181_2182_2184 TT T 32117 PASS DP=997;SVLEN=-1;XSEE=15 GT:DP:XDP:AD:XADL:SB:XAAD 1/1:997:1008,565:83,914:.:0,83,1,913:914 chrXII:450575..469931 1546 2229_2230_2232-2229_2231_2232 G T 74 lowad DP=16;SVLEN=0;XSEE=2 GT:DP:XDP:AD:XADL:SB:XAAD 1/0:16:598,565:2,14:-6.170374:2,0,14,0:14

I want to understand meaning of XADL field. Can anyone please help?

variant calling • 301 views
ADD COMMENTlink written 15 months ago by ziaursani0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1352 users visited in the last hour