obtaining fastg format after hybrid assembly
0
1
Entering edit mode
3.2 years ago

Hi everybody, I find the assembly graph visualisation a very useful tool to practically visualise my assembled metagenomes.

I performed an initial assembly with canu (minion reads) and after made a polishing with illumina short reads with Pilon. Unfortunately the output of Pilon does not provide a fastg format, therefore I cannot visualise how polishing has modified my long reads assembly...

Does anybody have a tool or something to suggest? I am sure something useful is out there...

Thanks Chiara

pilon hybrid assembly assembly graph fastg bandage • 613 views
ADD COMMENT

Login before adding your answer.

Traffic: 887 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6