obtaining fastg format after hybrid assembly
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3.2 years ago

Hi everybody, I find the assembly graph visualisation a very useful tool to practically visualise my assembled metagenomes.

I performed an initial assembly with canu (minion reads) and after made a polishing with illumina short reads with Pilon. Unfortunately the output of Pilon does not provide a fastg format, therefore I cannot visualise how polishing has modified my long reads assembly...

Does anybody have a tool or something to suggest? I am sure something useful is out there...

Thanks Chiara

pilon hybrid assembly assembly graph fastg bandage • 613 views

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