Question: snpEff build Error
gravatar for arup
8 weeks ago by
arup1.3k wrote:

While building snpEff database for Mitochondrial DNA using Revised Cambridge Reference Sequence genbank(NC_012920.1) file the tool was unable to read protein sequence data and was displaying following error message.

Protein check: NC_012920.1 OK: 0 Not found: 0 Errors: 13 Error percentage: 100.0%

Using the verbose mode I observed the error was caused by the mismatch between SnpEff predicted protein sequence and the Reference protein sequence in genbank file. Has anyone faced a similar issue? Also looking for other alternatives for annotating( to genes & amino acid changes) mitochondrial variants.

annotation software error • 84 views
ADD COMMENTlink written 8 weeks ago by arup1.3k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 843 users visited in the last hour