Imagine if I have a sample of Case (
Ca) vs Control (
Co) with 2 replicates, in other words, we would have:
Typically, one would analyze the data by comparing the conditions of both replicates together such as:
Ca2) vs (
Would it make sense to analyze each combination of the replicates (
Co2), compare the outliers (DEGs) and see how many of them are common and divergent ?